PhanerochaeteV1, Main, Exploration, bibRecord, 000731

Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates.

Identifieur interne : 000731 ( Main/Exploration ); précédent : 000730; suivant : 000732

Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates.

Auteurs : Shin Sato [États-Unis] ; Feng Liu [États-Unis] ; Hasan Koc [États-Unis] ; Ming Tien [États-Unis]

Source :

Microbiology (Reading, England) [ 1350-0872 ] ; 2007.

RBID : pubmed:17768245

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Bois (métabolisme), Chromatographie en phase liquide (MeSH), Données de séquences moléculaires (MeSH), Milieux de culture (composition chimique), Phanerochaete (croissance et développement), Phanerochaete (enzymologie), Phanerochaete (génétique), Phanerochaete (métabolisme), Protéines fongiques (composition chimique), Protéines fongiques (génétique), Protéines fongiques (métabolisme), Protéome (MeSH), Réaction de polymérisation en chaîne (MeSH), Régulation de l'expression des gènes fongiques (MeSH), Spectrométrie de masse (MeSH), Spécificité du substrat (MeSH), Séquence d'acides aminés (MeSH).
MESH :
- composition chimique : Milieux de culture, Protéines fongiques.
- croissance et développement : Phanerochaete.
- enzymologie : Phanerochaete.
- génétique : Phanerochaete, Protéines fongiques.
- métabolisme : Bois, Phanerochaete, Protéines fongiques.
- Analyse de profil d'expression de gènes, Chromatographie en phase liquide, Données de séquences moléculaires, Protéome, Réaction de polymérisation en chaîne, Régulation de l'expression des gènes fongiques, Spectrométrie de masse, Spécificité du substrat, Séquence d'acides aminés.

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Chromatography, Liquid (MeSH), Culture Media (chemistry), Fungal Proteins (chemistry), Fungal Proteins (genetics), Fungal Proteins (metabolism), Gene Expression Profiling (MeSH), Gene Expression Regulation, Fungal (MeSH), Mass Spectrometry (MeSH), Molecular Sequence Data (MeSH), Phanerochaete (enzymology), Phanerochaete (genetics), Phanerochaete (growth & development), Phanerochaete (metabolism), Polymerase Chain Reaction (MeSH), Proteome (MeSH), Substrate Specificity (MeSH), Wood (metabolism).
MESH :
- chemical , chemistry : Culture Media, Fungal Proteins.
- chemical , genetics : Fungal Proteins.
- chemical , metabolism : Fungal Proteins.
- enzymology : Phanerochaete.
- genetics : Phanerochaete.
- growth & development : Phanerochaete.
- metabolism : Phanerochaete, Wood.
- Amino Acid Sequence, Chromatography, Liquid, Gene Expression Profiling, Gene Expression Regulation, Fungal, Mass Spectrometry, Molecular Sequence Data, Polymerase Chain Reaction, Proteome, Substrate Specificity.

Abstract

White-rot fungi secret a large number of hydrolytic and oxidative enzymes for degradation of lignocellulosic material. The sequencing of the genome of the white-rot fungus Phanerochaete chrysosporium has facilitated the characterization of its complete extracellular proteome. P. chrysosporium was grown on liquid medium, containing glucose, cellulose or wood chips as the carbon source, and also in solid substrate fermentation bags. For liquid-grown cultures, the extracellular protein fraction was separated by 2D gel electrophoresis. Protein spots were analysed by in-gel digestion and liquid chromatography (LC)/MS/MS. A total of 18 additional protein spots from the 2D gels yielded hits from blast searches. From solid substrate cultures in which the fungus was grown in bags, the proteins were resolved by SDS-PAGE, subjected to in-gel digestion and then identified by LC/MS/MS. An additional 16 proteins yielded hits on blast searches. Enzymes involved in cellulose, hemicellulose, lignin and protein degradation were identified. Expression patterns were very similar between cellulose-grown cultures and wood-grown cultures. In addition to enzymes which act on lignocellulosic material, proteases were also found, indicating the need of fungi to scavenge for nitrogen in wood.

DOI: 10.1099/mic.0.2006/000513-0
PubMed: 17768245
PubMed Central: PMC2885613

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000722
to stream Main, to step Curation: 000722

Le document en format XML

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<term>Fungal Proteins (metabolism)</term>
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<front><div type="abstract" xml:lang="en">White-rot fungi secret a large number of hydrolytic and oxidative enzymes for degradation of lignocellulosic material. The sequencing of the genome of the white-rot fungus Phanerochaete chrysosporium has facilitated the characterization of its complete extracellular proteome. P. chrysosporium was grown on liquid medium, containing glucose, cellulose or wood chips as the carbon source, and also in solid substrate fermentation bags. For liquid-grown cultures, the extracellular protein fraction was separated by 2D gel electrophoresis. Protein spots were analysed by in-gel digestion and liquid chromatography (LC)/MS/MS. A total of 18 additional protein spots from the 2D gels yielded hits from blast searches. From solid substrate cultures in which the fungus was grown in bags, the proteins were resolved by SDS-PAGE, subjected to in-gel digestion and then identified by LC/MS/MS. An additional 16 proteins yielded hits on blast searches. Enzymes involved in cellulose, hemicellulose, lignin and protein degradation were identified. Expression patterns were very similar between cellulose-grown cultures and wood-grown cultures. In addition to enzymes which act on lignocellulosic material, proteases were also found, indicating the need of fungi to scavenge for nitrogen in wood.</div>
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<Abstract><AbstractText>White-rot fungi secret a large number of hydrolytic and oxidative enzymes for degradation of lignocellulosic material. The sequencing of the genome of the white-rot fungus Phanerochaete chrysosporium has facilitated the characterization of its complete extracellular proteome. P. chrysosporium was grown on liquid medium, containing glucose, cellulose or wood chips as the carbon source, and also in solid substrate fermentation bags. For liquid-grown cultures, the extracellular protein fraction was separated by 2D gel electrophoresis. Protein spots were analysed by in-gel digestion and liquid chromatography (LC)/MS/MS. A total of 18 additional protein spots from the 2D gels yielded hits from blast searches. From solid substrate cultures in which the fungus was grown in bags, the proteins were resolved by SDS-PAGE, subjected to in-gel digestion and then identified by LC/MS/MS. An additional 16 proteins yielded hits on blast searches. Enzymes involved in cellulose, hemicellulose, lignin and protein degradation were identified. Expression patterns were very similar between cellulose-grown cultures and wood-grown cultures. In addition to enzymes which act on lignocellulosic material, proteases were also found, indicating the need of fungi to scavenge for nitrogen in wood.</AbstractText>
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<region><li>Pennsylvanie</li>
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Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates.

Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates.

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